Activity

  • Maurer posted an update 8 months, 4 weeks ago

    The new classifier, AC.2021, outperformed existing tools on multiple tests using proteomics data. The underlying code for the classifier, provided herein, would be useful for researchers who desire improved classification accuracy when using their omics data sets to identify disease states.Shiga toxin is an AB5 toxin produced by Shigella species, while related toxins are produced by Shiga toxin-producing Escherichia coli (STEC). Infection by Shigella can lead to bloody diarrhea followed by the often fatal hemolytic uremic syndrome (HUS). In the present paper, we aimed for a simple and effective toxin inhibitor by comparing three classes of carbohydrate-based inhibitors glycodendrimers, glycopolymers, and oligosaccharides. We observed a clear enhancement in potency for multivalent inhibitors, with the divalent and tetravalent compounds inhibiting in the millimolar and micromolar range, respectively. However, the polymeric inhibitor based on galabiose was the most potent in the series exhibiting nanomolar inhibition. Alginate and chitosan oligosaccharides also inhibit Shiga toxin and may be used as a prophylactic drug during shigella outbreaks.Using quantum chemical methods and the original technique based on atom-atom potential methods, the molecular and crystal structure simulation of all possible structural forms of nitrodiaziridines were carried out. The possible pathways of thermal decomposition of nitrodiaziridines were modeled, and the most stable forms were identified. Thermodynamic stability, physicochemical characteristics, and detonation properties were also estimated. The obtained results enable a huge potential of the nitrodiaziridine-based compounds as high-energy materials for a variety of applications.Carbon-based materials are important desirable materials in areas such as supercapacitors and capacitive deionization. However, traditional commercial materials are heterogeneous and prone to agglomeration in nanoscale and have structural limitation of electrochemical and desalination performance due to poor transport channels and low capacitance of prepared electrodes. Here, we introduce the facile strategy for controllable preparation of two types of hollow carbon-based nanotubes (HCTs) with amorphous mesoporous structures, which are synthesized by employing a MnO2 linear template method and calcination of polymer precursors. The porous N-doped HCT (NHCT) shows a specific capacitance of 412.6 F g-1 (1 A g-1), with 77.3% rate capability (20 A g-1). The fabricated asymmetric MnO2//NHCT supercapacitor displays the energy density of 55.8 Wh kg-1 at a power density of 803.9 W kg-1. Furthermore, two typical MnO2//HCT and MnO2//NHCT devices both show the selective desalination performance of sulfate, and the MnO2//NHCT device possesses a high deionization value of 11.37 mg g-1 (500 mg L-1 Na2SO4). click here These fabricated hollow carbon-based architectures with functional characteristics promise potential applications in energy and environmental related fields.Flexible, ultralight, and mechanically robust electromagnetic interference (EMI) shielding materials are urgently demanded to manage the increasing electromagnetic radiation pollution, but it remains a great challenge to simultaneously achieve ultralight yet mechanically robust properties while retaining high-efficiency EMI shielding performance. Herein, we fabricate a novel waterborne polyurethane/Ti3C2Tx MXene/nickel ferrite (WPU/MXene/NiFe2O4) hybrid aerogel by constructing a strong chemical bonding interaction between an NCO-terminated WPU prepolymer and hydroxyl functionalized MXene nanosheets. The resultant aerogels exhibit remarkable lightweight and mechanical properties, particularly high compressive stress far exceeding that of other MXene-based and WPU-based porous materials. Furthermore, synergistic effects of the oriented porous architecture and the multiphase skeleton endow the hybrid aerogels with a high X-band EMI shielding effectiveness (SE) of 64.7 dB at a low density of ∼38.2 mg/cm3. The corresponding specific SE value achieves 1694-3124 dB·cm3/g, and the SSE/d is up to 15,620 dB·cm2/g, surpassing that of most reported EMI shielding materials. Importantly, this aerogel, with excellent electromagnetic radiation protection effects and shielding reliability, is highly promising for long-term and effective EMI shielding service in various application environments.Protein biotinylation via chemical or enzymatic reactions is often coupled with streptavidin-based enrichment and on-bead digestion in numerous biological applications. However, the popular on-bead digestion method faces major challenges of streptavidin contamination, overwhelming signals from endogenous biotinylated proteins, the lost information on biotinylation sites, and limited sequence coverage of enriched proteins. Here, we explored thiol-cleavable biotin as an alternative approach to elute biotinylated proteins from streptavidin-coated beads for both chemical biotinylation and biotin ligase-based proximity labeling. All possible amino acid sites for biotinylation were thoroughly evaluated in addition to the primary lysine residue. We found that biotinylation at lysine residues notably reduces the trypsin digestion efficiency, which can be mitigated by the thiol-cleavable biotinylation method. We then evaluated the applicability of thiol-cleavable biotin as a substrate for proximity labeling in living cells, where TurboID biotin ligase was engineered onto the mitochondrial inner membrane facing the mitochondrial matrix. As a proof-of-principle study, thiol-cleavable biotin-assisted TurboID proteomics achieved remarkable intraorganelle spatial resolution with significantly enriched proteins localized in the mitochondrial inner membrane and mitochondrial matrix.The Nazarov electrocyclization reaction is a convenient, widely used method for construction of cyclopentenones. In the past few decades, catalytic asymmetric versions of the reaction have been extensively studied, but the strategies used to control the position of the double bond limit the substituent pattern of the products and thus the synthetic applications of the reaction. Herein, we report highly enantioselective silicon-directed Nazarov reactions which were cooperatively catalyzed by a Lewis acid and a chiral Brønsted acid. The chiral cyclopentenones we synthesized using this method generally cannot be obtained by means of other catalytic enantioselective reactions, including previously reported methods for enantioselective Nazarov cyclization. The silicon group in the dienone substrate stabilized the β-carbocation of the intermediate, thereby determining the position of the double bond in the product. Mechanistic studies suggested that the combination of Lewis and Brønsted acids synergistically activated the dienone substrate and that the enantioselectivity of the reaction originated from a chiral Brønsted acid promoted proton transfer reaction of the enol intermediate.

Skip to toolbar